Trap-T Family Sorbitol/mannitol Transporter, Periplasmic Binding Protein, Smom

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trap-T Family Sorbitol/mannitol Transporter, Periplasmic Binding Protein, Smom
  Conformer 1
(PDB) 		2hzk (A)
  Conformer 2
(PDB) 		2hzl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 243 0.62   34 - 158   161 - 164   182 - 185   235 - 287   300 - 363
2 77 1.11   159 - 160   165 - 181   187 - 234   288 - 299

Sequence


           ________________________________________________________________________________________________________________________ 
 2hzk(A) : VTWRLASSFPKSLDTIFGGAEVLSK-lSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGG 
         :                                                                                                                          
 2hzl(A) : VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGG 
           ________________________________________________________________________________________________________________________ 

           __156_____164_________177_____184_______________________________________________234_____________________________________ 
 2hzk(A) : NTGVQ-gGWFRREINTVAD-qGLK-rVGGFAGKV-eRLGVVPQQIAGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYYYYPGWWEGGPTVHF-fNKSAYEGLTPTYQSLLRTACHA 
         :                                                                                                                          
 2hzl(A) : NTGVQMGGWFRREINTVADMQGLKMRVGGFAGKVMERLGVVPQQIAGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYYYYPGWWEGGPTVHFMFNKSAYEGLTPTYQSLLRTACHA 
           __156_____164_________177_____184_______________________________________________234_____________________________________ 

           _____________287_________299__________________________________________________________________                           
 2hzk(A) : ADAN-lQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAE-eASNPAFKKIWDSIKAFRSEHYTWAQIAEYNYDTF--vQQNAGKL                           
         :                                                                                                                          
 2hzl(A) : ADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEMEASNPAFKKIWDSIKAFRSEHYTWAQIAEYNYDTFMMVQQNAGKL                           
           _____________287_________299__________________________________________________________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.7
Translation
(A) 		-0.1
Closure
(%) 		99.4
Bending Residues
( green ) 		  156 - 162
  164 - 165
  177 - 182
  184 - 187
  234 - 235
  287 - 288
  299 - 300
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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