Vimentin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vimentin
  Conformer 1
(PDB) 		3swk (A)
  Conformer 2
(PDB) 		3uf1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 53 0.97   155 - 209
2 27 0.67   210 - 236

Sequence


           _________________________________________________________206___________________________________________                  
 3swk(A) : ******EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH***********                  
         :                                                                                                                          
 3uf1(A) : LGDLYEEErELRRQVDQLTNDKARVEVERDNLAEDI-rLREKLQEE-lQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI                  
           _________________________________________________________206___________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.8
Translation
(A) 		-2.2
Closure
(%) 		88.8
Bending Residues
( green ) 		  206 - 212
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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