Replicase Polyprotein 1Ab

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replicase Polyprotein 1Ab
  Conformer 1
(PDB) 		2fe8 (A)
  Conformer 2
(PDB) 		2fe8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 210 0.44   72 - 80   83 - 185   199 - 219   236 - 312
2 68 0.28   6 - 71   81 - 82
3 29 0.63   186 - 198   220 - 235

Sequence


           _____________________________________________________________________71____77___________________________________________ 
 2fe8(A) : MEVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 
         :                                                                                                                          
 2fe8(B) : MEVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 
           _____________________________________________________________________71____77___________________________________________ 

           ______________________________________________________________185__________198_______________216________________235_____ 
 2fe8(A) : LQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQES 
         :                                                                                                                          
 2fe8(B) : LQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQES 
           ______________________________________________________________185__________198_______________216________________235_____ 

           ___________________________________________________________________________                                              
 2fe8(A) : SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTI                                              
         :                                                                                                                          
 2fe8(B) : SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTT*                                              
           ___________________________________________________________________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.0
Closure
(%) 		58.9
Bending Residues
( green ) 		  71 - 72
  77 - 83
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		17.0
Translation
(A) 		-0.2
Closure
(%) 		84.9
Bending Residues
( green ) 		  185 - 186
  198 - 199
  216 - 220
  235 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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