Siroheme Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Siroheme Synthase
  Conformer 1
(PDB) 		1pjq (B)
  Conformer 2
(PDB) 		1pjq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 55 0.85   157 - 211
2 153 0.6   3 - 156
3 234 1.29   213 - 455

Sequence


           ________________________________________________________________________________________________________________________ 
 1pjq(B) : MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRS 
         :                                                                                                                          
 1pjq(A) : MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRS 
           ________________________________________________________________________________________________________________________ 

           ________________________________156________________________________________________207__________________________________ 
 1pjq(B) : PLMVAVSgGTSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQ 
         :                                                                                                                          
 1pjq(A) : PLMVAVSgGTSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQ 
           ________________________________156________________________________________________207__________________________________ 

           ________________________________________________________________________________________________________________________ 
 1pjq(B) : ADIVVYDRLVSDDIMNLVRRDADRVFVGKRAhCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTG 
         :                                                                                                                          
 1pjq(A) : ADIVVYDRLVSDDIMNLVRRDADRVFVGKR-hCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTg----- 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________                           
 1pjq(B) : GELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDKLNWFSNH                           
         :                                                                                                                          
 1pjq(A) : -ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDKLNWFSNH                           
           ______________________________________________________________________________________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.5
Translation
(A) 		-1.2
Closure
(%) 		79.7
Bending Residues
( green ) 		  156 - 160
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		102.3
Translation
(A) 		2.6
Closure
(%) 		61.9
Bending Residues
( green ) 		  207 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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