Small Nuclear Ribonucleoprotein Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Small Nuclear Ribonucleoprotein Homolog
  Conformer 1
(PDB) 		1m5q (G)
  Conformer 2
(PDB) 		1m5q (Y)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 64 0.9   14 - 78
2 56 0.87   79 - 136

Sequence


           ____________________________________________________________74__________________________________________________________ 
 1m5q(G) : FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIyRYIVHIDSTERRIDrEFAKQAEKIFPGvKYIEETNVVLIGDKVRVSEIGVEGVGPVAERAKRLFE 
         :                                                                                                                          
 1m5q(Y) : FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIyRYIVHIDSTERRIDrEFAKQAEKIFPGvKYIEETNVVLIGDKVRVSEIGVEGVGPVAERAKRLFE 
           ____________________________________________________________74__________________________________________________________ 

           _____                                                                                                                    
 1m5q(G) : EFLK*                                                                                                                    
         :                                                                                                                          
 1m5q(Y) : EFLKR                                                                                                                    
           _____                                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		152.6
Translation
(A) 		-6.5
Closure
(%) 		13.2
Bending Residues
( green ) 		  74 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download