Translation Initiation Factor If2/eif5b

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Translation Initiation Factor If2/eif5b
  Conformer 1
(PDB) 		1g7t (A)
  Conformer 2
(PDB) 		1g7s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 0.72   3 - 6   42 - 47   73 - 94   225 - 345
2 182 0.49   7 - 33   48 - 72   95 - 224
3 101 0.41   346 - 446
4 118 0.51   460 - 584

Sequence


           _____6___________________27______________47_______________________72____________________94______________________________ 
 1g7t(A) : MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASRiTQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP 
         :                                                                                                                          
 1g7s(A) : MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASRiTQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP 
           _____6___________________27______________47_______________________72____________________94______________________________ 

           _________________________________________________________________________________________________224____________________ 
 1g7t(A) : FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETG 
         :                                                                                                                          
 1g7s(A) : FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETG 
           _________________________________________________________________________________________________224____________________ 

           __________________________________________________________________________________________341___________________________ 
 1g7t(A) : LGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRP--sRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVK 
         :                                                                                                                          
 1g7s(A) : LGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLeSRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVK 
           __________________________________________________________________________________________341___________________________ 

           ___________________________________________________________________________446__________________________________________ 
 1g7t(A) : ILRDMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLT 
         :                                                                                                                          
 1g7s(A) : ILRDMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLT 
           ___________________________________________________________________________446__________________________________________ 

           ________________________________________________________________________________________________                         
 1g7t(A) : GVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHIL----lTDEELDLMDKIAEIKRKKNP*                         
         :                                                                                                                          
 1g7s(A) : GVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHILKEQLlTDEELDLMDKIAEIKRKKNPD                         
           ________________________________________________________________________________________________                         

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 6.5 0.0 69.3   6 - 7   27 - 42   47 - 48   72 - 73   94 - 95   224 - 225 Bending Region Analysis
1 3 15.1 -0.5 43.1   341 - 347 Bending Region Analysis
4 3 12.5 -0.5 54.7   446 - 460 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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