Troponin C

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Troponin C
  Conformer 1
(PDB) 		1j1d (A)
  Conformer 2
(PDB) 		1j1e (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 80 0.8   3 - 84
2 73 1.18   85 - 159

Sequence


           __________________________________________________________________________________84____________________________________ 
 1j1d(A) : MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSk--SEEELSDLFRMFDKNADGYIDLEELKIM 
         :                                                                                                                          
 1j1e(D) : MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML--nPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIM 
           __________________________________________________________________________________84____________________________________ 

           _________________________________________                                                                                
 1j1d(A) : LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE                                                                                
         :                                                                                                                          
 1j1e(D) : LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.6
Translation
(A) 		0.5
Closure
(%) 		44.5
Bending Residues
( green ) 		  84 - 85
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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