Vascular Apoptosis-Inducing Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vascular Apoptosis-Inducing Protein 1
  Conformer 1
(PDB) 		2ero (A)
  Conformer 2
(PDB) 		2erq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 88 0.51   407 - 488   493 - 494   500 - 503
2 218 0.3   187 - 404
3 110 0.48   489 - 492   495 - 499   504 - 604

Sequence


           ________________________________________________________________________________________________________________________ 
 2ero(A) : SNLTPEQQRYLNAKKYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLG 
         :                                                                                                                          
 2erq(A) : SNLTPEQQRYLNAKKYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________399_________________________ 
 2ero(A) : YLGGICNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSPRT 
         :                                                                                                                          
 2erq(A) : YLGGICNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSPRT 
           ____________________________________________________________________________________________399_________________________ 

           _____________________________________________________________488________499_503_________________________________________ 
 2ero(A) : CRDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQN 
         :                                                                                                                          
 2erq(A) : CRDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQN 
           _____________________________________________________________488________499_503_________________________________________ 

           __________________________________________________________________                                                       
 2ero(A) : TKIACEPQDVKCGRLYCFPNSPENKNPCNIYYSPNDEDKGMVLPGTKCADRKACSNGQCVDVTTPY                                                       
         :                                                                                                                          
 2erq(A) : TKIACEPQDVKCGRLYCFPNSPENKNPCNIYYSPNDEDKGMVLPGTKCADRKACSNGQCVDVTT**                                                       
           __________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.4
Translation
(A) 		-0.2
Closure
(%) 		98.0
Bending Residues
( green ) 		  399 - 407
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		9.5
Translation
(A) 		0.0
Closure
(%) 		16.1
Bending Residues
( green ) 		  488 - 489
  491 - 496
  499 - 500
  503 - 504
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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