Replicase Polyprotein 1Ab

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replicase Polyprotein 1Ab
  Conformer 1
(PDB) 		2fe8 (B)
  Conformer 2
(PDB) 		2fe8 (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 0.54   84 - 95   98 - 130   139 - 144   155 - 172   175 - 187   196 - 220   234 - 285   293 - 310
2 107 0.52   6 - 83   96 - 97   131 - 138   145 - 154   173 - 174   286 - 292
3 21 0.37   188 - 195   221 - 233

Sequence


           _________________________________________________________________________________83__________95_________________________ 
 2fe8(B) : MEVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 
         :                                                                                                                          
 2fe8(C) : MEVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 
           _________________________________________________________________________________83__________95_________________________ 

           _______130_____138___144_______154_______________172__________185______194_______________________220__________233_______ 
 2fe8(B) : LQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQES 
         :                                                                                                                          
 2fe8(C) : LQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQES 
           _______130_____138___144_______154_______________172__________185______194_______________________220__________233_______ 

           __________________________________________285____292______________________                                               
 2fe8(B) : SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTT                                               
         :                                                                                                                          
 2fe8(C) : SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTT*                                               
           __________________________________________285____292______________________                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.6
Translation
(A) 		-0.1
Closure
(%) 		8.6
Bending Residues
( green ) 		  83 - 84
  95 - 103
  130 - 132
  138 - 139
  144 - 145
  154 - 155
  172 - 175
  285 - 286
  292 - 293
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		14.6
Translation
(A) 		0.7
Closure
(%) 		21.4
Bending Residues
( green ) 		  185 - 188
  194 - 196
  220 - 221
  233 - 238
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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