Udp-N-Acetylmuramate-L-Alanine Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylmuramate-L-Alanine Ligase
  Conformer 1
(PDB) 		1p3d (A)
  Conformer 2
(PDB) 		1p31 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 210 0.33   84 - 85   111 - 178   182 - 326   359 - 360   364 - 365
2 94 0.25   16 - 83   86 - 109   179 - 181
3 137 0.33   327 - 358   361 - 363   368 - 471

Sequence


           _____________________________________________________________________83_______________________109_______________________ 
 1p3d(A) : IIPErRVQQIHFIGIGGAGsGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQlAEIrFRHGIAVAGTHGKTTTTA 
         :                                                                                                                          
 1p31(A) : *IPErRVQQIHFIGIGGAGsGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQlAEIrFRHGIAVAGTHGKTTTTA 
           _____________________________________________________________________83_______________________109_______________________ 

           _______________________________________178______________________________________________________________________________ 
 1p3d(A) : iSiYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLHLQPvSVVTNePDHdTYEGDFEKkATYVKFLHNLPFYGLAVcADDPVLeLVPKVGRQVITYGFSEQADYRIEDY 
         :                                                                                                                          
 1p31(A) : iSiYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLHLQPvSVVTNePDHdTYEGDFEKkATYVKFLHNLPFYGLAVcADDPVLeLVPKVGRQVITYGFSEQADYRIEDY 
           _______________________________________178______________________________________________________________________________ 

           _______________________________________________________320_________________________________356__________________________ 
 1p3d(A) : EQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIViFQPHRYSRTRD 
         :                                                                                                                          
 1p31(A) : EQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIViFQPHRYSRTRD 
           _______________________________________________________320_________________________________356__________________________ 

           __________________________________________________________________________________________                               
 1p3d(A) : LFDDFVQVLSQVDALIlDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW*                               
         :                                                                                                                          
 1p31(A) : LFDDFVQVLSQVDALIlDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESWK                               
           __________________________________________________________________________________________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.4
Translation
(A) 		-0.2
Closure
(%) 		87.9
Bending Residues
( green ) 		  83 - 86
  109 - 111
  178 - 182
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.6
Translation
(A) 		0.1
Closure
(%) 		97.7
Bending Residues
( green ) 		  320 - 327
  356 - 368
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download