Ribosomal RNA Large Subunit Methyltransferase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosomal RNA Large Subunit Methyltransferase A
  Conformer 1
(PDB) 		1p91 (A)
  Conformer 2
(PDB) 		1p91 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 24 0.63   155 - 155   176 - 184   218 - 225   250 - 250   252 - 257
2 183 0.63   5 - 154   156 - 175   201 - 217   258 - 267
3 24 0.4   226 - 249   251 - 251

Sequence


           ________________________________________________________________________________________________________________________ 
 1p91(A) : SFSCPLCHQPLSREKNSYICPQRHQFDaKEGYVNLLPVQHKRSRDPGDSAEqARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 
         :                                                                                                                          
 1p91(B) : SFSCPLCHQPLSREKNSYICPQRHQFDaKEGYVNLLP----------dSAEqARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 
           ________________________________________________________________________________________________________________________ 

           __________________________154__________________175______184_____________________________217____225____________________24 
 1p91(A) : AAKRYPQVTFCVASSHRLPFSDTSdAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLeLKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPrLRGDEAVALLQtPFAWRAKPEVWQTL 
         :                                                                                                                          
 1p91(B) : AAKRYPQVTFCVASSHRLPFSDTSdAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLeLKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPrLRGDEAVALLQtPFAWRAKPEVWQTL 
           __________________________154__________________175______184_____________________________217____225____________________24 

           9_____257____________                                                                                                    
 1p91(A) : AAKEVFDCQTDFNIHLWQRSY                                                                                                    
         :                                                                                                                          
 1p91(B) : AAKEVFDCQTDFNIHLWQRSY                                                                                                    
           9_____257____________                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.5
Translation
(A) 		0.0
Closure
(%) 		39.0
Bending Residues
( green ) 		  154 - 156
  175 - 176
  184 - 208
  217 - 218
  257 - 258
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		8.6
Translation
(A) 		-0.1
Closure
(%) 		99.8
Bending Residues
( green ) 		  225 - 226
  249 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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