Survival Protein Sura

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Survival Protein Sura
  Conformer 1
(PDB) 		1m5y (D)
  Conformer 2
(PDB) 		1m5y (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 248 0.34   27 - 150   172 - 272   401 - 402   405 - 425
2 22 0.49   151 - 163   384 - 400   403 - 404
3 103 0.64   273 - 383

Sequence


           ______________________________________________________________________________________________________________________14 
 1m5y(D) : VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNN 
         :                                                                                                                          
 1m5y(B) : VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNN 
           ______________________________________________________________________________________________________________________14 

           5_______________163__________________________________________________________________________________________________272 
 1m5y(D) : EVRRRITILPQEVESLAQQtELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 
         :                                                                                                                          
 1m5y(B) : EVRRRITILPQEVESLAQQtELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 
           5_______________163__________________________________________________________________________________________________272 

           ____________________________________________________________________________________________________________383_______40 
 1m5y(D) : LRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKrAYR 
         :                                                                                                                          
 1m5y(B) : LR--------tEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN---rAYR 
           ____________________________________________________________________________________________________________383_______40 

           0____________________________                                                                                            
 1m5y(D) : MLMNRKFSEEAASWMQEQRASAYVKILSN                                                                                            
         :                                                                                                                          
 1m5y(B) : MLMNRKFSEEAASWMQEQRASAYVKILS*                                                                                            
           0____________________________                                                                                            

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 9.8 -0.3 98.6   145 - 151   163 - 173   400 - 413 Bending Region Analysis
1 3 17.7 1.4 50.2   272 - 283 Bending Region Analysis
2 3 11.3 0.5 41.0   383 - 384 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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