Mrna Decapping Enzyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mrna Decapping Enzyme
  Conformer 1
(PDB) 		1xmm (B)
  Conformer 2
(PDB) 		1xml (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 184 1.24   144 - 334
2 93 0.76   42 - 143

Sequence


           ________________________________________________________________________________________138_____________________________ 
 1xmm(B) : VRLPFSGFRLQKVLRESARDKIIFLHGKVN-dAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLE 
         :                                                                                                                          
 1xml(B) : VRLPFSGFRLQKVLRESARDKIIFLHGKVNeDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLE 
           ________________________________________________________________________________________138_____________________________ 

           ________________________________________________________________________________________________________________________ 
 1xmm(B) : SQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEA 
         :                                                                                                                          
 1xml(B) : SQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDMKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFe- 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________                                                                        
 1xmm(B) : PGSGVERAHLLAEVIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQ                                                                        
         :                                                                                                                          
 1xml(B) : ------RAHLLAEVIENLECDPRHYQQRTMTFALRADDPLLKLLQEAQQ                                                                        
           _________________________________________________                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.9
Translation
(A) 		2.3
Closure
(%) 		82.7
Bending Residues
( green ) 		  138 - 148
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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