Trigger Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trigger Factor
  Conformer 1
(PDB) 		1t11 (A)
  Conformer 2
(PDB) 		1t11 (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 257 1.37   110 - 333   337 - 373
2 106 1.02   7 - 109   334 - 336

Sequence


           ___________________________________________________________________________________________________________109__________ 
 1t11(A) : HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKAVRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGKDLVFTATFEVYPEVELKG 
         :                                                                                                                          
 1t11(B) : HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKAVRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGKDLVFTATFEVYPEVELKG 
           ___________________________________________________________________________________________________________109__________ 

           ________________________________________________________________________________________________________________________ 
 1t11(A) : LENIAVEKPAAdADVAEMLETLRKQQATWKEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKAAKFAIKVNKVEA 
         :                                                                                                                          
 1t11(B) : LENIAVEKPA-dADVAEMLETLRKQQATWKEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKAAKFAIKVNKVEA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________333_____________________________ 
 1t11(A) : RELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKA 
         :                                                                                                                          
 1t11(B) : RELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKA 
           ________________________________________________________________________________________333_____________________________ 

           ________________                                                                                                         
 1t11(A) : DEEKVKALITEMATAY                                                                                                         
         :                                                                                                                          
 1t11(B) : DEEKVKALITEMATA*                                                                                                         
           ________________                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.4
Translation
(A) 		1.3
Closure
(%) 		98.4
Bending Residues
( green ) 		  109 - 110
  333 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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