Uvrabc System Protein B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uvrabc System Protein B
  Conformer 1
(PDB) 		2fdc (B)
  Conformer 2
(PDB) 		1t5l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 280 0.8   6 - 92   115 - 148   150 - 150   156 - 252   322 - 352   378 - 395   399 - 410
2 112 0.66   96 - 109   149 - 149   151 - 153   253 - 321   353 - 377
3 176 0.69   396 - 398   411 - 591

Sequence


           ________________________________________________________________________________________90________________109___________ 
 2fdc(B) : VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEID 
         :                                                                                                                          
 1t5l(A) : VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEID 
           ________________________________________________________________________________________90________________109___________ 

           _________________________148__153_______________________________________________________________________________________ 
 2fdc(B) : KLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREH 
         :                                                                                                                          
 1t5l(A) : KLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREH 
           _________________________148__153_______________________________________________________________________________________ 

           _________252__________________________________________________________________321____________________________352________ 
 2fdc(B) : VAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQV 
         :                                                                                                                          
 1t5l(A) : VAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQV 
           _________252__________________________________________________________________321____________________________352________ 

           ______________377_______________395____________410______________________________________________________________________ 
 2fdc(B) : LVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLH---- 
         :                                                                                                                          
 1t5l(A) : LVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK 
           ______________377_______________395____________410______________________________________________________________________ 

           ___________________________________________________________________________________________________________________      
 2fdc(B) : ----iEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIR**      
         :                                                                                                                          
 1t5l(A) : TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV      
           ___________________________________________________________________________________________________________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.7
Translation
(A) 		0.1
Closure
(%) 		97.4
Bending Residues
( green ) 		  90 - 98
  109 - 115
  148 - 151
  153 - 156
  252 - 253
  321 - 322
  352 - 353
  377 - 378
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		14.0
Translation
(A) 		0.2
Closure
(%) 		36.6
Bending Residues
( green ) 		  395 - 399
  410 - 416
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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