DynDom - Protein Domain Motions

Glycosyl Transferase, Group 1 Family Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glycosyl Transferase, Group 1 Family Protein
Conformer 1 (PDB)	7ec1 (A)
Conformer 2 (PDB)	7ec3 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	324	0.5	2 - 305 410 - 412 480 - 480 482 - 497
2	172	0.71	306 - 409 413 - 479 481 - 481

Sequence

`________________________________________________________________________________________________________________________` `7ec1(A) : SMNYFVGNSLGVNLTGIEKAIINRLNLFKEMGRPAQCVFLSWNRYLYRNAQNYITSSDYINMYDFFQEATYLERNEPFDWLSYWTDECHYTLKHVENSHDFRIYDQERFLMYAHFQDPKY` `:` `7ec3(A) : AMNYFVGNSLGVNLTGIEKAIINRLNLFKEMGRPAQCVFLSWNRYLYRNAQNYITSSDYINMYDFFQEATYLERNEPFDWLSYWTDECHYTLKHVENSHDFRIYDQERFLMYAHFQDPKY` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `7ec1(A) : RILDYVNHFDSQRRKVKRDFYDVRGFLSCSRILVDKQQTLCEFFYNPEGDTKLEKYFSYKDGKPEVQKIIVYYANKQYFFNNETELGAFFIKQLYQHGDLFFSDRNVYTAPIFNLTPESI` `:` `7ec3(A) : RILDYVNHFDSQRRKVKRDFYDVRGFLSCSRILVDKQQTLCEFFYNPEGDTKLEKYFSYKDGKPEVQKIIVYYANKQYFFNNETELGAFFIKQLYQHGDLFFSDRNVYTAPIFNLTPESI` `________________________________________________________________________________________________________________________` `_______________________________________________________________305______________________________________________________` `7ec1(A) : PVVAVLHSTHIKNIDALDSSPFKNVYKAMFENLSRYRAIIVSTEQQKLDVEKRINHTIPVVNIPVGYSETIDTPVQTLDQRSVKLISVARYSPEKQLHQQIELIKRLVSYVPKIELHMYG` `:` `7ec3(A) : PVVAVLHSTHIKNIDALDSSPFKNVYKAMFENLSRYRAIIVSTEQQKLDVEKRINHTIPVVNIPVGYSETIDTPVQTLDQRSVKLISVARYSPEKQLHQQIELIKRLVSYVPKIELHMYG` `_______________________________________________________________305______________________________________________________` `______________________________________________408_412_______________________________________________________________478_` `7ec1(A) : FGSESKKLNELIQKYGLENHVYLRGFLSNLDQEYSDAYLSLITSNMEGFSLALLESLAHGVPVISYDIKYGPNELITSDFNGYLITKNDEDALFDKVKYVIDHPEVQQRLSKGSLAKAQQ` `:` `7ec3(A) : FGSESKKLNELIQKYGLENHVYLRGFLSNLDQEYSDAYLSLITSNMEGFSLALLESLAHGVPVISYDIKYGPNELITSDFNGYLITKNDEDALFDKVKYVIDHPEVQQRLSKGSLAKAQQ` `______________________________________________408_412_______________________________________________________________478_` `______________________` `7ec1(A) : YSKASLIKQWDQFVRLILEHHH` `:` `7ec3(A) : YSKASLIKQWDQFVRLILEH**` `______________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.7
Translation (A)	-0.7
Closure (%)	99.8
Bending Residues ( green )	305 - 312 408 - 410 412 - 413 478 - 486
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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