Histidine-Trna Ligase, Cytoplasmic

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Histidine-Trna Ligase, Cytoplasmic
  Conformer 1
(PDB) 		4g85 (A)
  Conformer 2
(PDB) 		4g84 (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 218 0.74   72 - 93   150 - 151   173 - 178   180 - 363   371 - 385   388 - 389
2 201 1.06   55 - 71   94 - 149   152 - 172   179 - 179   364 - 370   386 - 387   390 - 499

Sequence


           ___________________________71____________________93_______________________________________________149______________172__ 
 4g85(A) : ********KQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGkLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDN-yREFYQC 
         :                                                                                                                          
 4g84(B) : GPGSEFELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMsKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNrYREFYQC 
           ___________________________71____________________93_______________________________________________149______________172__ 

           _178____________________________________________________________________________________________________________________ 
 4g85(A) : DFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQ 
         :                                                                                                                          
 4g84(B) : DFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQ 
           _178____________________________________________________________________________________________________________________ 

           ______________________________________________________363____370____________385_________________________________________ 
 4g85(A) : ALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLL-gSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLK 
         :                                                                                                                          
 4g84(B) : ALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQgSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLK 
           ______________________________________________________363____370____________385_________________________________________ 

           ______________________________________________________________________________                                           
 4g85(A) : LVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG*                                           
         :                                                                                                                          
 4g84(B) : LVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ                                           
           ______________________________________________________________________________                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.9
Translation
(A) 		0.0
Closure
(%) 		59.2
Bending Residues
( green ) 		  71 - 72
  93 - 94
  149 - 152
  172 - 173
  178 - 180
  363 - 364
  370 - 371
  385 - 390
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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