Ktr System Potassium Uptake Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ktr System Potassium Uptake Protein A
  Conformer 1
(PDB) 		4j90 (A)
  Conformer 2
(PDB) 		4j91 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 113 0.45   10 - 122
2 88 1.56   123 - 220

Sequence


           __________________________________________________________________________________________________________________122___ 
 4j90(A) : NKQFAVIGLGRFGGSICKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE 
         :                                                                                                                          
 4j91(A) : **QFAVIGLGRFGGSICKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE 
           __________________________________________________________________________________________________________________122___ 

           _________________________________________________________________________________________________                        
 4j90(A) : KDMGVKIAQSLSDENVLNYIDLSDEYSIVELLATRKLDSKSIIDLNVRAKYGCTILAIKHHGDICLSPAPEDIIREQDCLVIMGHKKDIKRFENEGM                        
         :                                                                                                                          
 4j91(A) : KDMGVKIAQSLSDENVLNYIDLs----IVELL----lDSKSIIDLNVRA--gCTILAIKHHGDICLSPAPEDIIREQDCLVIMGHKKDIKRFENEGM                        
           _________________________________________________________________________________________________                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.9
Translation
(A) 		-3.7
Closure
(%) 		93.5
Bending Residues
( green ) 		  122 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download