Major Envelope Protein E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Envelope Protein E
  Conformer 1
(PDB) 		1ok8 (A)
  Conformer 2
(PDB) 		1oan (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 269 4.64   5 - 5   7 - 288
2 107 4.57   3 - 4   6 - 6   289 - 392

Sequence


           __3_____________________________________________________________________________________________________________________ 
 1ok8(A) : MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFT 
         :                                                                                                                          
 1oan(A) : MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFT 
           __3_____________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ok8(A) : CKKNMEGKIVQPENLEYTVVITPH--------------gKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF 
         :                                                                                                                          
 1oan(A) : CKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________288________________________________________________________________________ 
 1ok8(A) : KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTE 
         :                                                                                                                          
 1oan(A) : KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTE 
           _____________________________________________288________________________________________________________________________ 

           __________________________________                                                                                       
 1ok8(A) : KDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK                                                                                       
         :                                                                                                                          
 1oan(A) : KDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK                                                                                       
           __________________________________                                                                                       

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		58.9
Translation
(A) 		3.0
Closure
(%) 		93.1
Bending Residues
( green ) 		  3 - 20
  288 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download