Protein (Surface Antigen Psaa)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Surface Antigen Psaa)
  Conformer 1
(PDB) 		3zk7 (A)
  Conformer 2
(PDB) 		3ztt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 188 1.28   34 - 186   209 - 210   212 - 217   223 - 224   226 - 229   278 - 298
2 86 0.77   187 - 208   211 - 211   218 - 222   225 - 225   230 - 277   299 - 307

Sequence


           ________________________________________________________________________________________________________________________ 
 3zk7(A) : KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFA 
         :                                                                                                                          
 3ztt(A) : KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFA 
           ________________________________________________________________________________________________________________________ 

           ________________________________186_________________206________217__222_________________________________________________ 
 3zk7(A) : KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNI 
         :                                                                                                                          
 3ztt(A) : KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNI 
           ________________________________186_________________206________217__222_________________________________________________ 

           ___277__________________298___________                                                                                   
 3zk7(A) : PIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                                   
         :                                                                                                                          
 3ztt(A) : PIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                                   
           ___277__________________298___________                                                                                   

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.3
Translation
(A) 		-0.2
Closure
(%) 		98.3
Bending Residues
( green ) 		  186 - 187
  206 - 212
  217 - 218
  222 - 230
  277 - 278
  298 - 299
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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