Mitomycin-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mitomycin-Binding Protein
  Conformer 1
(PDB) 		1kmz (A)
  Conformer 2
(PDB) 		1kll (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 60 1.57   5 - 70
2 58 0.26   71 - 128

Sequence


           _____________________________________________________________65_________________________________________________________ 
 1kmz(A) : ARISLFAVVVEDMAKSLEFYRKLGVEIPAEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQA---gHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNV 
         :                                                                                                                          
 1kll(A) : ARISLFAVVVED-aKS-eFYRK-gVEIPAEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNV 
           _____________________________________________________________65_________________________________________________________ 

           ________                                                                                                                 
 1kmz(A) : VDLFAPLP                                                                                                                 
         :                                                                                                                          
 1kll(A) : VDLFAPLP                                                                                                                 
           ________                                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		175.4
Translation
(A) 		0.1
Closure
(%) 		99.8
Bending Residues
( green ) 		  65 - 71
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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