Phosphomannomutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphomannomutase
  Conformer 1
(PDB) 		1k35 (A)
  Conformer 2
(PDB) 		1k2y (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 309 0.58   11 - 246   249 - 258   264 - 279   289 - 300   306 - 308   321 - 321   330 - 363   367 - 369
2 133 0.52   247 - 248   259 - 263   280 - 288   301 - 305   309 - 320   322 - 329   364 - 366   370 - 461

Sequence


           ________________________________________________________________________________________________________________________ 
 1k35(A) : ****LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVG-vPTPVLYYAANVLEGKSGV-lTG-hNPPDYNGFKIVVAGE 
         :                                                                                                                          
 1k2y(X) : KAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGAHNPPDYNGFKIVVAGE 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________________2 
 1k35(A) : TLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIA-aKP-kVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGD 
         :                                                                                                                          
 1k2y(X) : TLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGD 
           _______________________________________________________________________________________________________________________2 

           46_________258__263_____________279______288_________300__305____________320______329_______________________________363_ 
 1k35(A) : GDRVGVVTNTGTIIYPDRLL-lFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPV-wKTGHSLIKKK-kETGALLAGE-sGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVF 
         :                                                                                                                          
 1k2y(X) : GDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVF 
           46_________258__263_____________279______288_________300__305____________320______329_______________________________363_ 

           ___________________________________________________________________________________________________                      
 1k35(A) : SAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF                      
         :                                                                                                                          
 1k2y(X) : SAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF                      
           ___________________________________________________________________________________________________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.6
Translation
(A) 		-0.2
Closure
(%) 		77.5
Bending Residues
( green ) 		  246 - 249
  258 - 259
  263 - 264
  279 - 280
  288 - 289
  300 - 301
  305 - 306
  308 - 309
  320 - 322
  329 - 330
  363 - 371
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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