DynDom - Protein Domain Motions

Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Phosphoglucosamine Mutase
Conformer 1 (PDB)	3i3w (A)
Conformer 2 (PDB)	3i3w (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	374	0.3	5 - 368 370 - 371 394 - 403 422 - 422 430 - 432
2	55	0.89	369 - 369 372 - 393 404 - 421 423 - 429 433 - 440

Sequence

`________________________________________________________________________________________________________________________` `3i3w(A) : KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFtVKHRAAAGFVITAhNKFTDNGIKLFSSNGFKLDDAL` `:` `3i3w(B) : KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFtVKHRAAAGFVITAhNKFTDNGIKLFSSNGFKLDDAL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3i3w(A) : EEEVEDiDGDFIYQPQFKFGSYKILANAIDEYIESIYSRFAKFVNYKGKVVVDCAHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGISLDGDADRI` `:` `3i3w(B) : EEEVEDiDGDFIYQPQFKFGSYKILANAIDEYIESIYSRFAKFVNYKGKVVVDCAHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGISLDGDADRI` `________________________________________________________________________________________________________________________` `_____________________________________________________________________________________________________________________368` `3i3w(A) : IIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQtNsYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFKLQGELqQ` `:` `3i3w(B) : IIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQtNsYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFKLQGELqQ` `_____________________________________________________________________________________________________________________368` `______________________393____400_________________421_____429______________` `3i3w(A) : TLINVPLTKKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRVvEADDKSLATNEAEYLVEKVKQKLV` `:` `3i3w(B) : TLINVPLTKKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRVvEADDKSLATNEAEYLVEKVKQKL*` `______________________393____400_________________421_____429______________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.8
Translation (A)	0.3
Closure (%)	95.0
Bending Residues ( green )	368 - 372 393 - 394 400 - 404 421 - 423 429 - 433
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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