DynDom - Protein Domain Motions

Programmed Cell Death 6-Interacting Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Programmed Cell Death 6-Interacting Protein
Conformer 1 (PDB)	2oev (A)
Conformer 2 (PDB)	4jjy (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	188	1.87	409 - 539 640 - 696
2	141	1.84	364 - 408 540 - 638

Sequence

`________________________________________________________________________________________________________________________` `2oev(A) : ATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKS` `:` `4jjy(A) : **********************************************************************************************************************` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2oev(A) : CVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEV` `:` `4jjy(A) : ********************************************************************************************************************` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2oev(A) : FPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPV` `:` `4jjy(A) : *******************************************************************************************************************V` `________________________________________________________________________________________________________________________` `___________________________________________407__________________________________________________________________________` `2oev(A) : SVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS` `:` `4jjy(A) : SVQQSLAAYNQRKADLVNRSIAQ-rEATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS` `___________________________________________407__________________________________________________________________________` `______________________________________________________538_______________________________________________________________` `2oev(A) : NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSV` `:` `4jjy(A) : NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKT-qGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFD-tSKFLTALAQDGVINEEALSV` `______________________________________________________538_______________________________________________________________` `_________________________________637_________________________________________________________________` `2oev(A) : TELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR**` `:` `4jjy(A) : TELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSK-kQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER` `_________________________________637_________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	65.4
Translation (A)	0.6
Closure (%)	94.3
Bending Residues ( green )	407 - 409 538 - 540 637 - 644
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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