Putative Amino Acid-Binding Periplasmic Abc Transporter Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Amino Acid-Binding Periplasmic Abc Transporter Protein
  Conformer 1
(PDB) 		6aal (A)
  Conformer 2
(PDB) 		6aal (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 193 1.29   10 - 115   130 - 135   159 - 239
2 37 1.48   116 - 129   136 - 158

Sequence


           _________________________________________________________________________________________________________115______124___ 
 6aal(A) : SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDL 
         :                                                                                                                          
 6aal(B) : SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDL 
           _________________________________________________________________________________________________________115______124___ 

           ____________________________158___________________________________________________________________________________       
 6aal(A) : SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS       
         :                                                                                                                          
 6aal(B) : SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS       
           ____________________________158___________________________________________________________________________________       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.2
Translation
(A) 		0.9
Closure
(%) 		97.2
Bending Residues
( green ) 		  115 - 116
  124 - 136
  158 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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