Response Regulator Fixj

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Response Regulator Fixj
  Conformer 1
(PDB) 		5xso (A)
  Conformer 2
(PDB) 		5xt2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 39 0.4   131 - 149   182 - 201
2 126 0.51   5 - 130
3 32 0.31   150 - 181

Sequence


           ______________________________________________________________________________________________________________________12 
 5xso(A) : TTKGHIYVIDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALPGLSFGCVVSDVRMPGLDGIELLKRMKAQQSPFPILIMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAMIESAIR 
         :                                                                                                                          
 5xt2(A) : *TKGHIYVIDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALPGLSFGCVVSDVRMPGLDGIELLKRMKAQQSPFPILIMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAMIESAIR 
           ______________________________________________________________________________________________________________________12 

           2________________________149_____________________________181_______________________                                      
 5xso(A) : QAEPAAKSEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAREYDISPRTIEVYRANVMTKMQANSLSELVRLAMRAGML*                                      
         :                                                                                                                          
 5xt2(A) : QAEPAAKSEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAREYDISPRTIEVYRANVMTKMQANSLSELVRLAMRAGMLN                                      
           2________________________149_____________________________181_______________________                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		50.7
Translation
(A) 		-0.7
Closure
(%) 		30.2
Bending Residues
( green ) 		  122 - 134
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		12.0
Translation
(A) 		0.1
Closure
(%) 		81.3
Bending Residues
( green ) 		  149 - 150
  181 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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