DynDom - Protein Domain Motions

Rhodopsin Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Rhodopsin Kinase
Conformer 1 (PDB)	3c4z (A)
Conformer 2 (PDB)	3ny0 (A)
Window Length	13
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	46	11.98	360 - 370 391 - 425
2	37	9.65	371 - 390 426 - 442

Sequence

`________________________________________________________________________________________________________________________` `3c4z(A) : RDRKYLARLKLPPLSKCEALRESLDLGFEGMCLEQPIGKRLFQQFLRTHEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGgLFQPLLRAVLAH` `:` `3ny0(A) : **********************************************************************************************************************` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3c4z(A) : LGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIR` `:` `3ny0(A) : ********************************************************************************************************************` `________________________________________________________________________________________________________________________` `_____________________________________________________________________________________________369__________________390___` `3c4z(A) : YHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG` `:` `3ny0(A) : **************************************************************************IIERLVGNLRDLNPLDFSVDHVDLEWFETRKKIARFKTRQGK` `______________________________________________________________________________________________19___________________40___` `_____________________________425________________________________________________________________________________________` `3c4z(A) : EKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRTVYAKNgAFSgVAFEKADTEFFQEFASGTCPIPWQEEMI` `:` `3ny0(A) : DIAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTV***********` `______________________________75________________________________________________________________________________________` `_____________` `3c4z(A) : ETGVFGDLNVWRP` `:` `3ny0(A) : ***********` `_____________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	160.8
Translation (A)	-2.9
Closure (%)	82.6
Bending Residues ( green )	369 - 371 390 - 391 425 - 426
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file

Download