Signal Recognition Particle Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Signal Recognition Particle Protein
  Conformer 1
(PDB) 		4c7o (A)
  Conformer 2
(PDB) 		1jpn (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 231 2.59   58 - 291
2 49 3.06   9 - 57

Sequence


           ______________________________________________________56________________________________________________________________ 
 4c7o(A) : ***NLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 
         :                                                                                                                          
 1jpn(A) : MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVL--KDRNLWFLVGLQGSGKTTTAAKL 
           ______________________________________________________56________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4c7o(A) : GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 
         :                                                                                                                          
 1jpn(A) : ALYYKGKGRRPLLV-AADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 4c7o(A) : PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILG***                                                              
         :                                                                                                                          
 1jpn(A) : GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD                                                              
           ___________________________________________________________                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.5
Translation
(A) 		-0.7
Closure
(%) 		90.0
Bending Residues
( green ) 		  56 - 58
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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