Upf0100 Protein Ma_0280

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Upf0100 Protein Ma_0280
  Conformer 1
(PDB) 		3k6u (A)
  Conformer 2
(PDB) 		3k6w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 0.51   122 - 291
2 138 0.38   43 - 121   292 - 350

Sequence


           _____________________________________________________________________________120________________________________________ 
 3k6u(A) : EVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPND 
         :                                                                                                                          
 3k6w(A) : EVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPND 
           _____________________________________________________________________________120________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3k6u(A) : DPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVE 
         :                                                                                                                          
 3k6w(A) : DPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVE 
           ________________________________________________________________________________________________________________________ 

           ________291_____________________________________________________________                                                 
 3k6u(A) : MVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENGQPPIVPAIAEGKDSMPEELQALVV                                                 
         :                                                                                                                          
 3k6w(A) : MVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENGQPPIVPAIAEGKDSMPEELQALVV                                                 
           ________291_____________________________________________________________                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.8
Translation
(A) 		0.4
Closure
(%) 		99.1
Bending Residues
( green ) 		  120 - 122
  291 - 292
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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