Thermolysin (E.C.3.4.24.27)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thermolysin (E.C.3.4.24.27)
  Conformer 1
(PDB) 		1l3f (E)
  Conformer 2
(PDB) 		1kjp (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 230 0.45   36 - 41   76 - 99   113 - 312
2 78 0.36   5 - 35   42 - 75   100 - 112

Sequence


           _______________________________33______41________________________________75____________________97____________112________ 
 1l3f(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
         :                                                                                                                          
 1kjp(A) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQM 
           _______________________________33______41________________________________75____________________97____________112________ 

           ________________________________________________________________________________________________________________________ 
 1l3f(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
         :                                                                                                                          
 1kjp(A) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________                                             
 1l3f(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
         :                                                                                                                          
 1kjp(A) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
           ____________________________________________________________________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.8
Translation
(A) 		0.2
Closure
(%) 		99.1
Bending Residues
( green ) 		  33 - 36
  41 - 42
  75 - 76
  97 - 100
  112 - 121
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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