Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		5e0k (F)
  Conformer 2
(PDB) 		5dw3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 304 0.43   3 - 100   118 - 122   181 - 383
2 75 0.41   101 - 117   123 - 180

Sequence


           ________________________________________________________________________________________________100______________117__12 
 5e0k(F) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHtNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 
         :                                                                                                                          
 5dw3(B) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHtNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 
           ________________________________________________________________________________________________100______________117__12 

           2_______________________________________________________180_____________________________________________________________ 
 5e0k(F) : GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 
         :                                                                                                                          
 5dw3(B) : GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 
           2_______________________________________________________180_____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5e0k(F) : DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMS 
         :                                                                                                                          
 5dw3(B) : DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDe-GQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMS 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 5e0k(F) : RDEIIIVNLSGRGDKDLDIVLKVS**                                                                                               
         :                                                                                                                          
 5dw3(B) : RDEIIIVNLSGRGDKDLDIVLKVSGN                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.3
Translation
(A) 		0.2
Closure
(%) 		95.0
Bending Residues
( green ) 		  100 - 101
  117 - 118
  122 - 123
  180 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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