Tyrosyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tyrosyl-Trna Synthetase
  Conformer 1
(PDB) 		1n3l (A)
  Conformer 2
(PDB) 		2dlc (X)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 1.88   10 - 42   45 - 48   57 - 91   119 - 213   265 - 269
2 135 1.79   43 - 44   49 - 56   92 - 118   214 - 264   270 - 325

Sequence


           _______________________________________42____48______56___________________77______________________________________118___ 
 1n3l(A) : APSPEEKLHLITRNLQEVLGEEKLKEIL--KERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGT 
         :                                                                                                                          
 2dlc(X) : **DPNEAFGLITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGS 
           _______________________________________46____52______60___________________81______________________________________122___ 

           _________________________________________________________________________________________213____________________________ 
 1n3l(A) : DYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSeSKIDLLDRKEDVKKKLKKA 
         :                                                                                                                          
 2dlc(X) : SYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL--AnSKIDLLEEPKQVKKKINSA 
           _________________________________________________________________________________________217____________________________ 

           _____________264__269__________________________________________________________________________________                  
 1n3l(A) : FCEPGNVENNGVLSFIKHVLFPLKS--------EFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKF-NTPALKKLASAAYP                  
         :                                                                                                                          
 2dlc(X) : FCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKEFQEASEKGYP                  
           _____________269__274__________________________________________________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.7
Translation
(A) 		1.0
Closure
(%) 		99.4
Bending Residues
( green ) 		  42 - 45
  48 - 50
  56 - 57
  77 - 92
  118 - 119
  213 - 214
  264 - 265
  269 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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