Udp-N-Acetylglucosamine 2-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine 2-Epimerase
  Conformer 1
(PDB) 		3beo (A)
  Conformer 2
(PDB) 		1vgv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 192 1.43   8 - 184   273 - 273   276 - 279   352 - 367
2 160 3.96   185 - 272   274 - 275   280 - 351

Sequence


           ________________________________________________________________________________________________________________________ 
 3beo(A) : GPVDMTERLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQI 
         :                                                                                                                          
 1vgv(A) : *********KVLTVFGTRPEAIK-aPLVHALAKDPF-FEAKVCVTAQHRE-lDQVLKLFSIVPDYDLNI-qPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRI 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________184____________________________________________________ 
 3beo(A) : PVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKLGNN-------RLVLMTAHRRENLGEPMRNMFRAIKRLV 
         :                                                                                                                          
 1vgv(A) : PVGHVEAGLRTGDLYSPWPEEANRTLTGHLA-yHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVsSDKLRSELAANYPFIDPDKKiLVTGHRRESFGRGFEEICHALADIA 
           _________________________________________________________________179____________________________________________________ 

           ________________________________________272____________________________________________________________________________3 
 3beo(A) : DKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTTERPEGIEAGTLKLAGTDEETIFSLADELLSDKEAHDKMSKAS 
         :                                                                                                                          
 1vgv(A) : TTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLn-HAWLILTDSGGIQEEAPSLGKPVLV-rDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEY-QAsRAH 
           ________________________________________276____________________________________________________________________________3 

           51_____________________                                                                                                  
 3beo(A) : NPYGDGRASERIVEAILKHFNK*                                                                                                  
         :                                                                                                                          
 1vgv(A) : NPYGDGQACSRILEALKNNRISL                                                                                                  
           55_____________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		29.4
Translation
(A) 		-0.9
Closure
(%) 		92.5
Bending Residues
( green ) 		  184 - 185
  272 - 280
  351 - 352
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download