Undecaprenyl Pyrophosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Undecaprenyl Pyrophosphate Synthase
  Conformer 1
(PDB) 		2d2r (A)
  Conformer 2
(PDB) 		2dtn (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 0.47   10 - 50   88 - 221
2 21 0.87   51 - 87

Sequence


           ______________________________________________50_________________________87_____________________________________________ 
 2d2r(A) : STLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFeVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNY 
         :                                                                                                                          
 2dtn(B) : *TLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYA------mKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNY 
           ______________________________________________50_________________________87_____________________________________________ 

           ___________________________________________________________________________________________________                      
 2d2r(A) : GSKNELSRAFKSLLESPPSNISLLESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVR****                      
         :                                                                                                                          
 2dtn(B) : GSKNELSRAFKSLLESP---------lENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGE                      
           ___________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.6
Translation
(A) 		0.0
Closure
(%) 		27.6
Bending Residues
( green ) 		  50 - 51
  87 - 91
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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