Arf Guanine-Nucleotide Exchange Factor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arf Guanine-Nucleotide Exchange Factor 2
  Conformer 1
(PDB)
1ku1 (A)
  Conformer 2
(PDB)
1ku1 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 119 0.57   627 - 647   657 - 657   661 - 757
2 85 0.71   -4 - 626   648 - 656   658 - 660

Sequence


           ___________________________________________________________________________626_______________644________655_____________ 
 1ku1(A) : GLVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSA 
         :                                                                                                                          
 1ku1(B) : GLVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSA 
           ___________________________________________________________________________626_______________644________655_____________ 

           ___________________________________________________________________________________________                              
 1ku1(A) : YCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP                              
         :                                                                                                                          
 1ku1(B) : YCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP                              
           ___________________________________________________________________________________________                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.2
Translation
(A)
-0.1
Closure
(%)
91.3
Bending Residues
( green )
  626 - 627
  644 - 652
  655 - 661
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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