Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1ooj (A)
  Conformer 2
(PDB)
1y6w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 1.65   8 - 28   62 - 143
2 31 1.71   29 - 61

Sequence


           _______________20______________________________________60_______________________________________________________________ 
 1ooj(A) : **TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 
         :                                                                                                                          
 1y6w(A) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV-rSLGCNPTEAELQD-iNEVDADGNGTINFPEFLT--aR-CkDTDSEEEIREAFRVFDKDGNGYISAAELRHV-tNLGEKLTDEEVD 
           _______________19______________________________________59_______________________________________________________________ 

           _______________________                                                                                                  
 1ooj(A) : EMIREADIDGDGQVNYEEFVTMM                                                                                                  
         :                                                                                                                          
 1y6w(A) : E-iREADIDGDGQVNYEEFVQtA                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
52.0
Translation
(A)
3.3
Closure
(%)
89.3
Bending Residues
( green )
  20 - 29
  60 - 63
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download