Chorismate Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chorismate Lyase
  Conformer 1
(PDB)
2ahc (B)
  Conformer 2
(PDB)
1g1b (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.92   3 - 11   36 - 128   132 - 158
2 31 1.34   12 - 35   129 - 131   159 - 162

Sequence


           _________11______________________35_____________________________________________________________________________________ 
 2ahc(B) : SHPALTQLRALRYSKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLSADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFT 
         :                                                                                                                          
 1g1b(B) : SHPALTQLRALRYCKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFT 
           _________11______________________35_____________________________________________________________________________________ 

           _____128___________________________158______                                                                             
 2ahc(B) : SSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY                                                                             
         :                                                                                                                          
 1g1b(B) : SSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY                                                                             
           _____128___________________________158______                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.3
Translation
(A)
0.1
Closure
(%)
85.6
Bending Residues
( green )
  11 - 13
  35 - 36
  128 - 129
  131 - 132
  158 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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