Coenzyme A Biosynthesis Bifunctional Protein Coabc

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Coenzyme A Biosynthesis Bifunctional Protein Coabc
  Conformer 1
(PDB)
1u7u (A)
  Conformer 2
(PDB)
1u7z (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 0.73   185 - 199   210 - 280   308 - 403
2 21 1.25   200 - 209   281 - 307

Sequence


           ________________199_______209____________________________________________________________________280__________________30 
 1u7u(A) : *PVNDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAA----------lTIKMVK 
         :                                                                                                                          
 1u7z(C) : SPVNDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKeLTIKMVK 
           ________________199_______209____________________________________________________________________280__________________30 

           7__________________________________________________________________________________________________                      
 1u7u(A) : NPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICAN----------sDNNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNR                      
         :                                                                                                                          
 1u7z(C) : NPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNR                      
           7__________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.8
Translation
(A)
-0.9
Closure
(%)
46.7
Bending Residues
( green )
  199 - 200
  209 - 212
  280 - 281
  307 - 308
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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