Complement C2a Fragment

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C2a Fragment
  Conformer 1
(PDB)
2i6s (A)
  Conformer 2
(PDB)
2i6q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 287 0.8   225 - 226   383 - 384   435 - 437   442 - 669   672 - 730
2 203 0.57   227 - 382   385 - 434   438 - 441   670 - 671

Sequence


           _226____________________________________________________________________________________________________________________ 
 2i6s(A) : SKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETM 
         :                                                                                                                          
 2i6q(A) : SKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETM 
           _226____________________________________________________________________________________________________________________ 

           __________________________________379____________________________________________________434____441_____________________ 
 2i6s(A) : AWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVG---vDWRELNELG------rHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPWHV 
         :                                                                                                                          
 2i6q(A) : AWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPWHV 
           __________________________________379____________________________________________________434____441_____________________ 

           ________________________________________________________________________________________________________________________ 
 2i6s(A) : TIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRD 
         :                                                                                                                          
 2i6q(A) : TIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRD 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________669_________________________________ 
 2i6s(A) : HENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADkRAPRSKVPPPR 
         :                                                                                                                          
 2i6q(A) : HENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCL---rKRAPRSKVPPPR 
           ____________________________________________________________________________________669_________________________________ 

           __________________________                                                                                               
 2i6s(A) : DFHINLFRMQPWLRQHLGDVLNFLPL                                                                                               
         :                                                                                                                          
 2i6q(A) : DFHINLFRMQPWLRQHLGDVLNFLPL                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.6
Translation
(A)
-0.1
Closure
(%)
19.5
Bending Residues
( green )
  226 - 227
  379 - 385
  434 - 435
  437 - 438
  441 - 442
  669 - 672
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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