Deoxynucleoside Monophosphate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Deoxynucleoside Monophosphate Kinase
  Conformer 1
(PDB)
1dek (B)
  Conformer 2
(PDB)
1dek (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 133 0.51   30 - 161   173 - 174
2 87 0.51   3 - 29   168 - 172   175 - 239

Sequence


           ___________________________29___________________________________________________________________________________________ 
 1dek(B) : MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPlTRKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDV 
         :                                                                                                                          
 1dek(A) : MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPlTRKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDV 
           ___________________________29___________________________________________________________________________________________ 

           _____________________________________161________172_____________________________________________________________________ 
 1dek(B) : INNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPG----------aGLPIRDGDLVITNDGSLEELFSKIKNTLKVL 
         :                                                                                                                          
 1dek(A) : INNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQKSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKVL 
           _____________________________________161________172_____________________________________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.0
Translation
(A)
-0.3
Closure
(%)
97.4
Bending Residues
( green )
  29 - 30
  161 - 168
  172 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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