Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
1drw  
  Conformer 2
(PDB)
1arz (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 156 0.91   5 - 129   240 - 270
2 110 0.38   130 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 1drw    : HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADI 
         :                                                                                                                          
 1arz(D) : *DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADI 
           ________________________________________________________________________________________________________________________ 

           _____129__________________________________________________________________________________________________________238___ 
 1drw    : AIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRM 
         :                                                                                                                          
 1arz(D) : AIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRM 
           _____129__________________________________________________________________________________________________________238___ 

           ________________________________                                                                                         
 1drw    : TFANGAVRSALWLSGKESGLFDMRDVLDLNNL                                                                                         
         :                                                                                                                          
 1arz(D) : TFANGAVRSALWLSGKESGLFDMRDVLDLNNL                                                                                         
           ________________________________                                                                                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.0
Translation
(A)
1.1
Closure
(%)
99.7
Bending Residues
( green )
  129 - 131
  238 - 240
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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