DNA Repair And Recombination Protein Rada

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Repair And Recombination Protein Rada
  Conformer 1
(PDB) 		2dfl (A)
  Conformer 2
(PDB) 		2bke (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 0.72   87 - 320
2 71 2.43   15 - 86

Sequence


           ___________________________________________________________________________86___________________________________________ 
 2dfl(A) : ***TINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 
         :                                                                                                                          
 2bke(A) : NIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKER-nVKKISTGSQALDGLLAGGIETRT-tEFFGEFGSGKTQLCHQLSV 
           ___________________________________________________________________________86___________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2dfl(A) : NVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDI 
         :                                                                                                                          
 2bke(A) : NVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-aKALGLDIDNV-nNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 2dfl(A) : AVIITNQVMhTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDA**                                                              
         :                                                                                                                          
 2bke(A) : AVIITNQV------vPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDAEE                                                              
           ___________________________________________________________                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		175.4
Translation
(A) 		-2.7
Closure
(%) 		72.6
Bending Residues
( green ) 		  86 - 89
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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