Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1ob5 (C)
  Conformer 2
(PDB)
1aip (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 2.79   95 - 98   217 - 403
2 178 2.38   11 - 94   99 - 216

Sequence


           ___________________________________________________________________________82___________________________________________ 
 1ob5(C) : IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ 
         :                                                                                                                          
 1aip(A) : ***KPHVNVGTIGHVDHGKTTLTAALTYVTAAENP------------------------tAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ 
           ___________________________________________________________________________82___________________________________________ 

           ______________________________________________________________________________________214_______________________________ 
 1ob5(C) : VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 
         :                                                                                                                          
 1aip(A) : VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 
           ______________________________________________________________________________________214_______________________________ 

           ________________________________________________________________________________________________________________________ 
 1ob5(C) : KVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPG 
         :                                                                                                                          
 1aip(A) : KVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________                                                                                 
 1ob5(C) : DNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                 
         :                                                                                                                          
 1aip(A) : DNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                 
           ________________________________________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
102.5
Translation
(A)
-0.3
Closure
(%)
82.6
Bending Residues
( green )
  82 - 99
  214 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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