Gamma-Snap

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Snap
  Conformer 1
(PDB)
2ifu (B)
  Conformer 2
(PDB)
2ifu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 171 0.26   97 - 273
2 90 0.12   3 - 96

Sequence


           _________________________________________________________________________________________95_____________________________ 
 2ifu(B) : AAQKISEAHEHIAKAEKYLKTSFkWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGlKDLQRpEAVQYIEKASVyVENGTPDTAAaLDRAGKLePL 
         :                                                                                                                          
 2ifu(A) : AAQKISEAHEHIAKAEKYLKTSFkWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGlKDLQRpEAVQYIEKASVyVENGTPDTAAaLDRAGKLePL 
           _________________________________________________________________________________________95_____________________________ 

           ________________________________________________________________________________________________________________________ 
 2ifu(B) : DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSyKEeNYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQL 
         :                                                                                                                          
 2ifu(A) : DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSyKEeNYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQL 
           ________________________________________________________________________________________________________________________ 

           _________________________                                                                                                
 2ifu(B) : LRVCRSPLVTYdNDYAKLAISLKVP                                                                                                
         :                                                                                                                          
 2ifu(A) : LRVCRSPLVTYdNDYAKLAISLKVP                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.4
Translation
(A)
-0.2
Closure
(%)
87.4
Bending Residues
( green )
  95 - 108
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download