Major Surface Antigen P30

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Surface Antigen P30
  Conformer 1
(PDB)
1kzq (A)
  Conformer 2
(PDB)
1ynt (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 125 0.95   7 - 131
2 121 0.94   132 - 252

Sequence


           ________________________________________________________________________________________________________________________ 
 1kzq(A) : PLVANQVVTCPDKKSTAAVILTPTENHFTLKCPKTALTEPPTLAYSPNRQICPAGTTSSCTSKAVTLSSLIPEAEDSWWTGDSASLDTAGIKLTVPIEKFPVTTQTFVVGCIKGDDAQSC 
         :                                                                                                                          
 1ynt(G) : PLVANQVVTCPDKKSTAAVILTPTENHFTLKCPKTALTEPPTLAYSPNRQICPAGTTSSCTSKAVTLSSLIPEAEDSWWTGDSASLDTAGIKLTVPIEKFPVTTQTFVVGCIKGDDAQSC 
           ________________________________________________________________________________________________________________________ 

           ______131_______________________________________________________________________________________________________________ 
 1kzq(A) : MVTVTVQARASSVVNNVARCSYGADSTLGPVKLSAEGPTTMTLVCGKDGVKVPQDNNQYCSGTTLTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSVIIGCTGGSP 
         :                                                                                                                          
 1ynt(G) : MVTVTVQARASSVVNNVARCSYGADSTLGPVKLSAEGPTTMTLVCGKDGVKVPQDNNQYCSGTTLTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSVIIGCTGGSP 
           _____3131_______________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1kzq(A) : EKHHCTVKLEFAG                                                                                                            
         :                                                                                                                          
 1ynt(G) : EKHHCTVKLEFA*                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
109.6
Translation
(A)
-1.0
Closure
(%)
49.3
Bending Residues
( green )
  131 - 132
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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