Imine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Imine Reductase
  Conformer 1
(PDB) 		4d3d (B)
  Conformer 2
(PDB) 		4d3f (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 148 0.38   24 - 112   121 - 179
2 133 0.26   113 - 120   180 - 304

Sequence


           ____________________________________________________________________________________104____________119__________________ 
 4d3d(B) : ****RKSVTVIGLGPMGQAMADVFLEYGYSVTVWNRTSSKADQLVAKGAIRVSTVNEALAANELVILSLTDYNVMYSILEPVSENLFGKVLVNLSSDTPEKARKAAKWLEDRGARHITGG 
         :                                                                                                                          
 4d3f(B) : AVGNRKSVTVIGLGPMGQAMADVFLEYGYSVTVWNRTSSKADQLVAKGAIRVSTVNEALAANELVILSLTDYNVMYSILEPVSENLFGKVLVNLSSDTPEKARKAAKWLEDRGARHITGG 
           ____________________________________________________________________________________104____________119__________________ 

           _______________________________________179______________________________________________________________________________ 
 4d3d(B) : VQVPPSGIGKSESYTYYSGDRVVFEAHRETLEVLTSSDYRGEDPGLAMLYYQIQMDIFWTAMLSYLHALAIANANGITAEQFLPYASAMMSSLPKFVEFYTPRLDEGEHPGDVDRLAMGL 
         :                                                                                                                          
 4d3f(B) : VQVPPSGIGKSESYTYYSGDRVVFEAHRETLEVLTSSDYRGEDPGLAMLYYQIQMDIFWTAMLSYLHALAIANANGITAEQFLPYASAMMSSLPKFVEFYTPRLDEGEHPGDVDRLAMGL 
           _______________________________________179______________________________________________________________________________ 

           __________________________________________________                                                                       
 4d3d(B) : ASVEHVVHTTQEAGIDIALPATVLEVFRRGMKTGHASDSFTSLIEIFKNS                                                                       
         :                                                                                                                          
 4d3f(B) : ASVEHVVHTTQEAGIDIALPATVLEVFRRGMKTGHASDSFTSLIEIFKN*                                                                       
           __________________________________________________                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.9
Translation
(A) 		0.1
Closure
(%) 		83.2
Bending Residues
( green ) 		  104 - 116
  119 - 121
  179 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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