L-Allo-Threonine Aldolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Allo-Threonine Aldolase
  Conformer 1
(PDB) 		2fm1 (A)
  Conformer 2
(PDB) 		2fm1 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 245 0.3   8 - 253
2 92 0.29   3 - 7   254 - 340

Sequence


           _______6________________________________________________________________________________________________________________ 
 2fm1(A) : **MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKA 
         :                                                                                                                          
 2fm1(D) : HHMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKA 
           _______6________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fm1(A) : IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSgLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAA 
         :                                                                                                                          
 2fm1(D) : IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSgLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAA 
           ________________________________________________________________________________________________________________________ 

           ___________253__________________________________________________________________________________________                 
 2fm1(A) : GIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                 
         :                                                                                                                          
 2fm1(D) : GIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                 
           ___________253__________________________________________________________________________________________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.7
Translation
(A) 		-0.1
Closure
(%) 		87.3
Bending Residues
( green ) 		  6 - 8
  253 - 254
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download