L-Seryl-Trna(sec) Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Seryl-Trna(sec) Kinase
  Conformer 1
(PDB) 		3adb (A)
  Conformer 2
(PDB) 		3a4l (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 168 0.45   2 - 171
2 60 3.11   172 - 246

Sequence


           ________________________________________________________________________________________________________________________ 
 3adb(A) : ***HHlIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNS-rRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 
         :                                                                                                                          
 3a4l(B) : MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________170__________________________________________________________________ 
 3adb(A) : GEKIPNEVIKK-yEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIKKeEVDADRV 
         :                                                                                                                          
 3a4l(B) : GEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPKF----------nNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIK----dADRV 
           ___________________________________________________174__________________________________________________________________ 

           ___________                                                                                                              
 3adb(A) : LKEFKDLLNSY                                                                                                              
         :                                                                                                                          
 3a4l(B) : LKEFKDLLNSY                                                                                                              
           ___________                                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		136.8
Translation
(A) 		-14.3
Closure
(%) 		93.4
Bending Residues
( green ) 		  170 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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