Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB) 		1k20 (B)
  Conformer 2
(PDB) 		1k23 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 183 1.03   4 - 191
2 115 0.77   192 - 306

Sequence


           ________________________________________________________________________________________________________________________ 
 1k20(B) : SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSA 
         :                                                                                                                          
 1k23(B) : EKILIFGHQNPDTDTICSAIAYADL-KNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANE-VNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCT 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________191__________________________________________________ 
 1k20(B) : SSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIE 
         :                                                                                                                          
 1k23(B) : ATILNK-yKENNVKIEKEIAGL-lSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLN-lKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVIS 
           ___________________________________________________________________189__________________________________________________ 

           ______________________________________________________________________                                                   
 1k20(B) : KAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA                                                   
         :                                                                                                                          
 1k23(B) : KVVAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDA***                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		69.1
Translation
(A) 		0.3
Closure
(%) 		95.4
Bending Residues
( green ) 		  191 - 195
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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