Mhc Class I Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I Antigen
  Conformer 1
(PDB) 		1ydp (A)
  Conformer 2
(PDB) 		2dyp (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 0.41   7 - 183
2 86 0.47   184 - 269

Sequence


           ________________________________________________________________________________________________________________________ 
 1ydp(A) : SHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSASPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLIRGYERYAYDGK 
         :                                                                                                                          
 2dyp(A) : SHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSASPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGK 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________183__________________________________________________________ 
 1ydp(A) : DYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTF 
         :                                                                                                                          
 2dyp(A) : DYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTF 
           ___________________________________________________________183__________________________________________________________ 

           ___________________________________                                                                                      
 1ydp(A) : QKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQ                                                                                      
         :                                                                                                                          
 2dyp(A) : QKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQ                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.0
Translation
(A) 		-0.3
Closure
(%) 		59.8
Bending Residues
( green ) 		  183 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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